deconwolf 0.4.5

A software for deconvolution of widefield microscopy images.

Contents

• Getting started
  • Method
  • Build and install
  • Performance hints
  • Installation
  • Minimal usage example
  • Bugs
  • Alternatives
  • References
• Installation notes
  • General requirements on Linux/Unix
  • Normal build procedure with CMake
  • Without GPU acceleration:
  • Machine specific optimizations
  • System wide installation
  • GPU Acceleration via OpenCL
  • Platform specific hints
  • Replacing standard dependencies
• Deconvolution: Usage guide
  • Don’t expect too much
  • Running deconwolf
  • Test data
  • Memory considerations
  • PSF considerations
  • Supported image formats
  • Log files
  • Output format
  • Questions and Answers
• Spot detection and measurements
  • Spot size
  • Dot candidates
  • Fitting dots
  • Measurements
• Spot-based image alignment
  • Analyzing the output
  • Trouble shooting
  • Going further
• Ilastic-like segmentation
  • Workflow
• Version History
  • 0.4.5
  • 0.4.4_rc4 (windows only)
  • 0.4.4
  • 0.4.3
  • 0.4.2
  • 0.4.1
  • 0.4.0
  • Older
• Man pages
  • dw nuclei
• GNU General Public License